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Hello there,
I am trying to use your package using nanopore samples, but I am getting the following error:
`Cannot determine format of file: /home/user/my_output/distmatrix.txt`.
The `distmatri…
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HI, I study bacterial genomes.
I want to use TT-Mars to assess mapping quality in structure variants of bacterial short reads to a reference genome.
Can I use this for the purpose?
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Hi!
I am running panaroo on a dataset of ~10 k rather small bacterial genomes. I am using our HPC, more specifically a 256GB node with 20 cores. I have set panaroo to use all 20 cores but it still …
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I am able to obtain NRPS/PKS products in the web version, but not in the command-line version. I have set all the parameters in the command-line version, yet I am still unable to obtain results for NR…
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Are there any optimizations when using large files, such as dask, spark, chunking you can suggest? Our 2 source files create a 4.6TB file.
mRNA.fa: 123754 lines
sRNA.fa: 159990 lines
I see we rea…
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### Summary
- What does this package do? (explain in 50 words or less):
Data from large-scale biological experiments, managed by the [openBIS](https://sis.id.ethz.ch/software/openbis.html)…
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Having issues with pplacer step - it seems everything else is working, and the check install step works just fine so I don't think it's an install issue...
I have tried giving the command different…
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Dear Wei Shen,
Thanks for this great tool! I just have a question regarding the viral database building tutorial here: [https://bioinf.shenwei.me/kmcp/database/#refseq-viral-or-fungi](url)
It's reco…
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Hi,
I just wanted to bring up an issue that I have run into when using the wf-bacterial-genomes workflow. I am getting this error on the medakaNetwork process when I run the workflow on a directory o…
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Running --resume-from BAMFILE.BAM gives a filesystem error - cannot make canonical path: No such file or directory [-x]
Am I doing something wrong?