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I am trying to demultiplex tumor samples using genotype data from healthy cells, and demuxlet is calling the majority of my tumor cells doublets. I'm looking for any insight about whether somatic muta…
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Hi, I got the following error when running DoubletDecon, could anyone give some suggestion? Thanks.
Combining similar clusters...
Creating synthetic doublet profiles...
Step 1: Removing possible …
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Project UUID: f81efc03-9f56-4354-aabb-6ce819c3d414
Project Title: Cell hashing with barcoded antibodies enables multiplexing and doublet detection for single cell genomics
Project Short Name: Multip…
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> Each kata is an independent, self-contained F# script
Is there a suggested order anyway ?
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### Description of the bug
Hi, thank you for the tool, super cool!
Runs very well on CPU, but not GPU.
There the pipeline gets stuck after `SCDOWNSTREAM:PREPROCESS:DOUBLET_DETECTION:DOUBLETDETECTIO…
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Suppose i am designing a doublet. How to define Aperture Stop for off-axis simulation and design?
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**Design a Ritchey-Chretien Objective (+ an optic of your choosing!)**
- Obscured (on-axis)
- Unobscured (on-axis _or_ off-axis)
**Special Surfaces**
- 1 Asphere on 1 Surface
- OR 1 Doublet (C…
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- [ ] QC needs update
- [ ] Clustering
- [x] [Annotation](https://figshare.com/articles/dataset/Luecken_multiome_human_bone_marrow_2021_s4d8_cellular_structure/23586042)
- [ ] Data integration
- […
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It would be great to have this app on F-Droid. Can we do it?
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Hi @haowenz,
I tend to not force use of the 10X barcode include-list since it is possible there could be valuable information/real cells, but I noticed that some scATACseq data processed via `chromap…