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I used the dataset "human" in your paper, run your code and calc AUPR. The result was that the AUPR is almost 1. I think its too high, a little weird. I am new in this area, could you give some expla…
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Propose to add a new term to annotate C. elegans genes to a more specific child of 'Wnt signaling pathway' (GO:0016055) for the cell fate specification pathway in the early embryo that combines elemen…
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For the blast server, it would be good to have a file that gives a two column file (assemblies\tcomma delimited track list). Need to get the list of tracks desired (from @adamjohnwright)
The place…
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https://bioentity.link//#/publication/10.1534/genetics.120.303435
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Built the index first using gencode v40
```
mudskipper index --gtf /SAN/vyplab/vyplab_reference_genomes/annotation/human/GRCh38/gencode.v40.annotation.gtf --dir-index /SAN/vyplab/vyplab_reference_…
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There are currently two separate wrappers for [SAMTOOLS MPILEUP](https://snakemake-wrappers.readthedocs.io/en/stable/wrappers/samtools/mpileup.html) and [VARSCAN MPILEUP2SNP](https://snakemake-wrapper…
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See https://github.com/NCATS-Tangerine/translator-knowledge-beacon/blob/develop/api/knowledge-beacon-list.yaml for master list
* [x] SemMedDB - @RichardBruskiewich
* [x] Wikidata (aka garbanzo) …
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dianeoinglis commented on Sep 3, 2016 for Issue #180
Thank you so much! These are awesome. For just a bit more awesomeness, there are two more host-types to create terms for.. Non-vertebrates (or…
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Hey @jbms — I read through the docs and some comments in #199 and I don't think there's an easy way to do this currently:
If I have a `segmentation` channel with IDs `[1, 2, 3, 4]` and a `neuroglan…
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https://bioentity.link//#/publication/10.1093/g3journal/jkad184