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Big fan of the Seqan3 library, thanks for all of your hard work! I have been using the MSA parser recently and it has worked quite well, however, the majority of my work centers around genome alignmen…
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Hi Alevar! I was just looking at your beautiful code and I am quite curious as to what HIV data you used as each of the parameters and if you could link them. I want to see what each of the files look…
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Hi brain!
when I run ~/software/EVidenceModeler-1.1.1/EvmUtils/partition_EVM_inputs.pl --genome hs.fasta --gene_predictions gene_predicted.gff3 --protein_alignments gth.gff3 --segmentSize 100000…
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This is a really smart tool. More mappers should include support for circular genomes. Several questions/suggestions:
1. In order to make this more universal, why not extend each sequence by 100% of …
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Hi there!
FIrst off, thanks for your great work on this.
I've been having heaps of fun trying to figure out working combinations of different genome graph tools over the last few weeks.
I'm run…
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Hi Alex,
I am testing STAR to detect EBV RNAseq reads mixed with human reads.
In one setting, I indexed a combined genome and aligned the reads to the combined genome. This method did not give a…
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Good morning,
When running funannotate predict (1.8.13) I get an error at the CodingQuarry stage. The exact same commands/pipeline worked for two isolates, and fail for two others, so it is not an…
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Hi Erik
I have a question about the -M parameter for edyeet and wfmash. Since it produces a better overall mapping by merging the alignments of each segment, wouldn't it be better to use -M every t…
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it'd be super nice to have some ways for people to dig into charcoal predictions of contamination. we can't provide it as part of the default charcoal workflow unless we want to provide access to the …
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The following workflow `https://github.com/genome/analysis-workflows/blob/master/definitions/pipelines/bisulfite.cwl` has a linked sub-workflow `https://github.com/genome/analysis-workflows/blob/maste…
ghost updated
4 years ago