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Hello, I am following the pipeline of finding alternative splicing analysis using QoRTs and JunctionSeq.
I am working on tomato rna-seq data
I have used HISAT2 for alignment and used "--minMAPQ 60".…
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Hi Erik
I've been running Seqwish with the output from minimap2 and edyeet for comparison, across multiple chromosomes and also testing with multiple whole genomes.
I've found the PAF files fro…
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Hello, I'm trying to statistically predict the number of repeats for the CANVAS chr4 RFC1 expansion (STR=AAAAG) in a sample for which over 600k reads are available following a barcoded-PCR ONT sequenc…
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Thank you for developing metaeuk! We are trying to supplement trinity assemblies with metaeuk-predicted "transcripts" for annotating a fish genome.
During the PASA step, we saw that among the ~64000…
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Metapro is missing the taxid_trees file, or whatever file is supposed to be found in that folder. The lib_downloader.py script seems to have completed successfully, but no file or folder with that nam…
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I am trying to use pipeline for gene synteny between two genomes. After first step, It ended with the following error in step2:
Step2: run jcvi.compara.catalog ortholog
Step2: run jcvi.compara.catal…
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Hi Pierre Bost,
I downloaded the nine FASTQ files for series GSE145926, via SRA in the original format, conform reported from paper. So I end up with two files the each sample. Did you use the 18 …
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```
This is more of a feature request:
When opening a file on an s3fs mount, s3fs will download the entire file to a
temporary file on the local disk to use. This is fine in general, but is
ineffic…
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```
This is more of a feature request:
When opening a file on an s3fs mount, s3fs will download the entire file to a
temporary file on the local disk to use. This is fine in general, but is
ineffic…
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With Emacs Org mode I use hi-lock-mode with a configuration section within my org file for coloring different keywords (RegExp).
It would be a nice addition if orgro would parse this section and colo…