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quite often you see experiments with phenotypes which show things like
decreased histone H3-K9 dimethylation at centromere outer repeat
this is refering to the endogenous repeat dg.
However, you s…
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https://docs.google.com/spreadsheets/d/1OL0zoPwZhR5UaHDNsfxwhxno18vLHDJnJtwJ2pHXahA/edit#gid=0
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Hello,
pombe mst1 has a mapping to regulation of transcription, DNA-templated from IPR002717.
I can't see any evidence that mst1 is regulating transcription directly. Mst1 is a histone acetyltra…
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```
> What steps will reproduce the problem?
We loaded 12 result files produced by Searchgui (MS-GF+) into PeptideShaker.
After about 2 hours of analysis, with PeptideShaker at more than 80% of the
…
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Was wondering if this wrapper can be used to call broad histone modifications for samples without input, MACS2 isn't very good at calling very diffuse peaks.
Thanks!
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Hi,
I would need a series of terms for a number of protein acyltransferase activities. It looks like protein acetylation is not the only protein acylation and that other acylation modifications are …
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For the bioc release we need to document the dataset in a more detail. The current version is too short:
```
Histone H2A data generated on a Thermo Orbitrap Lumos MS device.
```
@pavel-shliaha: …
sgibb updated
6 years ago
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Longer biomedical texts include references which often are concatenated with regular text. This module aims to either remove or partition out the references. For example
... key feature in Dro…
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Hi all,
According to Pavel the selMZ parameter was unfair since the value was based on a combination of charge and the protein sequence. To accommodate for this issue Pavel added a new parameter c…