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Hi,
it happened to me that `overlapInCorePartition` generated too many partitions and a 67GB large `correction/1-overlapper/overlap.sh` shellscript, practically just huge if/else code which a call …
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- The tool artic-ncov2019-epi2me is missing version v1.1.0 - The tool artic-ncov2019 is missing version v1.2.4 - The tool auspice is missing version v2.52.1 - The tool bakta is missing version v1.9.3 …
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Hello,
I am trying to run chromosome_scaffolder.sh on an assembly, but I get the following error:
```
user@ubuntu1804sudoenabled:~/data/volume_2/CBS16149A_chr$ ../MaSuRCA-4.0.5/bin/chromosome_s…
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Hi,
I ran into the following problem:
```
> singularity run --bind /scratch/masurca/:/data /pkg/containers/masurca_4.1.0.sif masurca /data/NRotund.cfg
Error line 17 of configuration file '/dat…
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Apologies if this has been covered, if so please point me to the right place. I want to do a hybrid assembly with high coverage Illumina short insert reads and lower coverage ONT reads. My colleague s…
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Hi,
I am looking for some assemblers to assemble a high heterozygous rate plant genome(diploid, het rate > 2%, haplotype genome size ~3.6G).
And I want to know how to use minia to assemble such a …
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Hi,
I'd like to try mcmc-date, but when I run `step4-mcmcdate` it seems like that there's something wrong with my `ghc` that I recently installed:
```
./step4-mcmcdate -f step4-strassert.conf -…
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polca.sh (part of @alekseyzimin/masurca) appears to need an older version of samtools, I have provided a fix for this in current code patches folder which can be used to update in place the `polca.sh`…
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Dear Aleksey & Team,
I wanted to test EviAnn on Mus musculus. I used Mus caroli data as reference input. My job died. Here are the details:
prepare fasta files:
`gffread -W -y mus_caroli_prot…
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SSR markers are identified but primer designing not working. Everytime you select any SSR marker, it shows the error
Here jcf7180029229335 is contig name
Traceback (most recent call last):
File "…