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tagging @colleenXu to add documentation on the advantages of new x-bte system so @newgene and I can work on prioritization
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When trying the following query
```python
import cell_census
census = cell_census.open_soma()
adata = cell_census.get_anndata(
census,
"Homo sapiens",
obs_query={
"tis…
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In https://github.com/biothings/BioThings_Explorer_TRAPI/issues/370, we analyzed the list of 46 APIs currently listed in the config.js file. Among those APIs, there are at least 924 operations in whic…
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The use of the Friday standup calls to cover a more nuanced question in greater depth was discussed at the most recent Relay meeting, and this is the first of those questions of the month. Please use…
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Hello,
I work with three types of omics data (transcriptomics (RNA-seq or scRNA-seq), methylome (EM-seq) and epigenomics (Chip-seq) in Alzheimer’s disease. Can I use Mixomics to integrate these thr…
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Thanks for developing a nice tool! I used glue to integrate scRNA-seq and scATAC-seq datasets from multiple samples. I want to get clustering results covering both modalities in the umap plot.
What …
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This is a new issue to track our team's implementation of this issue on qualifiers for chemical-gene associations: https://github.com/NCATSTranslator/ReasonerAPI/issues/348
From that issue:
> The …
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This will power linkage of distinct interactive plots and is the most important feature to make this a useful feature for multiomics data visualisation / exploration
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Hi all,
Thanks for the great work!
I was trying to use your getDORCScores function to obtain the DORC score based on the modified output of Seurat LinkPeaks function. I use Seurat Object's ATAC …
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An updated reasoner-validator has been deployed to the beta version of the ARAX UI. BTE (and most teams) are showing errors. Example links are below, more info can be found by mousing over and click…