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Excuese me
I'm a new to study bioinformatics analysis. I try to analysis mutational signature and I find this tool SigProfilerExtractor, I found the output of SigProfilerExtractor is likely same to S…
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This is a question rather than an issue. What mutational contexts we can use for extraction? For example, can we extract signatures beyond SBS96, DBS, and INDELs? I am asking because got an error when…
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https://mp.weixin.qq.com/s/RBJFw9q0zP2HFiXj-og6Kg
ixxmu updated
2 years ago
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https://mp.weixin.qq.com/s/pVnSoHGRavSFa6WcX_7q4Q
ixxmu updated
2 years ago
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https://mp.weixin.qq.com/s/eNSXzU-jkZT_wMhZD3n8Bw
ixxmu updated
2 years ago
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Previously, we assumed that one `Generic Assay Type` will share the same set of entities, however like `Mutational Signatures`, there can be two sets of entities (version 2 and version 3).
So show en…
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When running script on paper data, get following error that seems to be related to folder name in python script indicated above:
```
Traceback (most recent call last): [K
File "/home/user/.ne…
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Hello dear faculties from Alexandrov lab,
I got DBS78A signature from the decomposed solution. I thought all the signatures should be matched a known COSMIC signature, however DBS78A doesn't seem t…
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Hi,
I'm currently using SigProfilerSingleSample to refit mutational catalog from my samples against signatures from 2013.
I'm now trying to do the same but with a VCF instead of a mutational catal…
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https://mp.weixin.qq.com/s/keyIKhlHBfUHVeA41obshg
ixxmu updated
2 years ago