-
Hi all,
I'm working with a great team to run several OHDSI network studies on Stanford's CDM. I'll put my updates in this thread for record keeping. One initial question I have is what version of P…
-
In a fresh (empty) virtual environment am trying:
```
pip install -U pip
pip install -U schema-automator
```
Strangely some dependency conflict precludes installation of 1.3.5 linkml.
```
p…
-
OMOP Team,
Thank you again for taking the time to talk to us on the 24th about the changes we were proposing based on the data
dictionary we have created for Food Allergies.
Following our inter…
-
For Darwin we have a data partner that is using active directory authentication to setup their connection to sql server and they are getting an error when creating a temp table. In the error their UID…
-
@jay-sanjay and I were chatting about methods for benchmarking the JuliaHealth ecosystem against other ecosystems. I mentioned that benchmarking in terms of speed/performance would most likely not be …
-
# PhEMA Workbench End To End Demo Execution RFC
### High-Level Overview
The Workbench should allow the user to run a PhEMA phenotype definition against an OMOP database. It should be possible to…
-
Currently, the mappings generated by omop2obo do not respect the semantic constraints of all participating ontologies (which makes some sense because of the significant negative impact on performance)…
-
The cnext_drug_exposure extract only pulls from the chemo table. Per OMOP description, the drug exposure table is to include a drug ingested or otherwise introduced into the body. Drugs include prescr…
-
-
Data from CDMs may include a "multirace" value or more than on race records per patient.
The OMB standard for collecting race records indicate[ "the total number of respondents reporting "more th…