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callahantiff
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OMOP2OBO
OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies
http://tiffanycallahan.com/OMOP2OBO_Dashboard
MIT License
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Bump urllib3 from 1.25.11 to 1.26.17 in /applications/N3C
#81
dependabot[bot]
opened
9 months ago
0
Bump scipy from 1.5.4 to 1.10.0
#80
dependabot[bot]
opened
12 months ago
0
Bump nltk from 3.6.5 to 3.6.6
#79
dependabot[bot]
closed
1 year ago
1
Bump urllib3 from 1.25.11 to 1.26.5 in /applications/N3C
#78
dependabot[bot]
closed
1 year ago
1
Applications
#77
callahantiff
closed
1 year ago
1
updating logo
#76
callahantiff
closed
1 year ago
1
adding link to preprint
#75
callahantiff
closed
1 year ago
1
TODO - Pubs+Presentation Task: Deposit versions in Zenodo to get citable DOI
#74
jmcmurry
opened
1 year ago
1
adding dashboard to README
#73
callahantiff
closed
1 year ago
1
Harmonise OMOP mappings with boomer or a boomer-like approach?
#72
matentzn
opened
1 year ago
1
Bump lxml from 4.6.2 to 4.9.1
#71
dependabot[bot]
closed
1 year ago
1
Work-around for NLTK download issues
#70
chrisroederucdenver
opened
2 years ago
0
fix name of umls_cui_data on branch for no mrconso file
#69
chrisroederucdenver
closed
9 months ago
0
running without a mrconso file has an error‘
#68
chrisroederucdenver
opened
2 years ago
0
requirements.txt derived from setup.py
#67
chrisroederucdenver
closed
9 months ago
0
fix #65 no value for merge option does not issue error about multiple…
#66
chrisroederucdenver
closed
9 months ago
3
merge option fails with multiple
#65
chrisroederucdenver
opened
2 years ago
1
requirements.txt based on latest pip install of each (March 2022)
#64
chrisroederucdenver
closed
2 years ago
1
Coding: add requirements.txt
#63
chrisroederucdenver
opened
2 years ago
2
Coding: SSSOM Output
#62
joeflack4
opened
2 years ago
11
Bump lxml from 4.6.2 to 4.6.5
#61
dependabot[bot]
closed
1 year ago
1
Preparing for First release
#60
callahantiff
closed
2 years ago
1
Bump nltk from 3.5 to 3.6.5
#59
dependabot[bot]
closed
2 years ago
1
Bump lxml from 4.6.2 to 4.6.3
#58
dependabot[bot]
closed
2 years ago
1
Move main.py into package and add vanity CLI
#57
cthoyt
opened
3 years ago
4
Add vanity CLI
#56
cthoyt
opened
3 years ago
4
Generate OMOP2OBO Mappings to OHDSI Cohort Definitions
#55
callahantiff
opened
3 years ago
3
Moving from Travis CI to GitHub Actions
#53
callahantiff
closed
3 years ago
2
updating gitignore
#52
callahantiff
closed
3 years ago
0
Mapping rdfization
#51
callahantiff
opened
3 years ago
1
Migrate from TravisCI to GitHub Actions
#50
callahantiff
closed
3 years ago
0
Wiki: Broken links on V1.0 release page
#49
ablack3
closed
3 years ago
1
Create YouTube Demo
#48
callahantiff
opened
3 years ago
0
HELP: Error Analysis
#47
callahantiff
closed
3 years ago
5
Extension: Extend mapping to take advantage of existing UMLS mappings in ontologies
#46
callahantiff
opened
3 years ago
0
Improve string delimiter detection in mapping pipline
#45
callahantiff
opened
3 years ago
1
Polishing v1.0.0
#44
callahantiff
closed
3 years ago
0
Development
#43
callahantiff
closed
3 years ago
0
Coding: Parallelize tf-idf cosine similarity code
#42
callahantiff
opened
3 years ago
0
Coding: Leverage OMOP CDM Ancestor Hierarchy Levels
#41
callahantiff
opened
3 years ago
0
fixing similarity scoring
#40
callahantiff
closed
3 years ago
0
Improving mapping parameters
#39
callahantiff
closed
3 years ago
0
Development
#38
callahantiff
closed
3 years ago
0
Development
#37
callahantiff
closed
3 years ago
0
Coding: Parallelize mapping aggregation results
#36
callahantiff
opened
3 years ago
0
Coding: adding helper function to leverage OHDSIAnanke
#35
callahantiff
closed
3 years ago
1
Coding: Add RDF-ization code to convert mappings to RDF
#34
callahantiff
opened
3 years ago
23
TODO - Mapping: Extend/incorporate V1.0 mapping feedback into v2.0 release
#33
callahantiff
closed
3 years ago
0
Add Jupyter Notebooks
#32
callahantiff
closed
3 years ago
3
Wiki: Re-organize wiki to support releases
#31
callahantiff
closed
3 years ago
4
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