-
Dear Concern,
Sometimes MACSE ignores the reading frame of the original protein sequence provided, and introduces frameshifts in the beginning. Is there a way of getting around that? How can I tell…
-
This may be related to other issues such as:
https://github.com/STAR-Fusion/STAR-Fusion/issues/97
https://github.com/STAR-Fusion/STAR-Fusion/issues/195
We have a very clear NPM1-ALK fusion that…
-
After getting the results in the output log file about total number of pseudogenes, pseudofinder categorize it into short, long and fragmented genes. What does this short genes imply. On what basis t…
-
Hello!
I want to color gene labels with the same colors as geom_gene (I have "geom_gene(aes(label=gene))"). Also, I want gene labels in italics.
fill and fontface are not working for geom_gene_la…
-
I've never done transcritpomics where there's been a reference genome! And i realized i haven't done it yet... and should for WSN... so anyway:
there's a published genome for _Pycnopodia helianthoi…
-
#### What data file(s) does this issue pertain to?
- `gene-level-snv-consensus-annotated-mut-freq.tsv.gz` in `analyses/snv-frequencies/results/`
- data file `snv-dgd.maf.tsv.gz`
#### What relea…
-
## About
https://github.com/monarch-initiative/mondo-ingest/pull/108
⬆️ The OMIM slurp includes a lot of non-diseases and it didn't used to. @sabrinatoro mentioned that certain types of terms (lik…
-
I construct my pangenome and I tried to draw spots but I got an unexcepted error.
```
2023-02-09 10:33:06 draw_spot.py:l656 INFO Drawing 314 spots
2023-02-09 10:33:06 draw_spot.py:l565 INFO …
-
I am trying to get number of pseudogenes from one of my files. As, it is mentioned that pseudofinder accepts .gbf as well as .gbk as its input files. I am trying gbf files as an input. But it is givin…
-
v0.3.
general
- can we distribute the kgx summary alongside the nodes and edges file?
nodes
- provided_by: should only refer to the actual provider for the node. E.g. for a FlyBase:FBgn0…