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Rather than having many intermediate files, record data in fast5 files similar to DNA.
Objectives:
* Document bulk & DNA read fast5 specs (roughly).
* Identify commonalities to current data struc…
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Hello,
I’ve been admiring the chromosome collinearity images produced by the ` jcvi.graphics.karyotype` module; they are indeed very beautiful. However, it seems that this module is designed prima…
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I'm using Artemis 18.0.1 on Windows 10 with Java version "1.8.0_241".
I see this error across two machines with the same specifications and with multiple .gbk/.fasta files
I search for a given se…
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**Describe the issue**
@WuSelina's job silently failed while reporting success:
Submission Script output:
/hot/project/disease/KidneyTumor/GHLR-000108-SubclonalArchitecture/metapipeline-DNA/bat…
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The new version of CUDASW 4.0 claims to support only protein chains.
What needs to be done to be able to search in the nucleotide database?
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Hi,
I want to filter the splicing event by briekit-event-filter funciton. But some error and warnings came out. The GTF and fa files were downloaded from ENSEMBL. I assume that briekit may not suppor…
AIBio updated
2 years ago
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My current understanding of how the metaWRAP pipeline should work involves doing QC on the demultiplexed libraries (I receive the data demultiplexed from the sequencing people), concatenating the out…
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# Issue Report
## Please describe the issue:
Running dorado 0.7.0 duplex with v5.0.0 and 4.3.0 version models and modified base models shows multiples errors like this: `[error] basic_string::su…
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Hello,
I've run deviaTE and get stuck at the point of generation of .sam file. The script doesn't stop, and no errors are generated or anything in the log files.
I was wondering if it had anything…
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**Describe the issue**
I am running some new samples through the metapipeline and trying to test various partitions (F72/F32/F16) to find the minimum requirement for my dataset. I found no issues whe…