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Hey!
I am trying to run VirClust standalone, but I am getting the following error message:
VirClust called with projdir=/virclust/virclust_scripts/out infile=/virclust/virclust_scripts/in/test.f…
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Hi there,
I have a couple of questions...
1) I am running SwiftOrtho on around 700 bacterial genomes. I substituted step 1 with a diamond run (with a suitably increased max-hits pram) and by run…
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I really like NOJAH as a tool for GW cluster analysis, but a lot of its elements are broken. Just enough about it works such that it can get through the genome-wide cluster analysis tab. The combined …
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so we have a basically a prototype of what the visualisation could be like,
now we need to build the api that goes with it
so we need to document what data the UI needs, and how they would like it…
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Hey! I do have another question!
After annotating my MAGs, I saw that FeGenie didn't find any transport-related clusters in any of my MAGs, which wouldn't make sense biologically (I have, among o…
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Small question on your API. Adding minhashes in a custom (e.g. duck-tapped) genome sqlite database, my sequences seam to have non-standard bases (not ATGC, like N, K,R and so on) I know that your stan…
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## Bug Report
### Affected tool(s) or class(es)
FilterMutectCalls and possibly Mutect2
### Affected version(s)
GATK 4.1.7.0, still occurs in 4.1.8.1
### Description
User running Mutect2 i…
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Dear shujun,
First of all apologize for my bad English. I have sequenced dozens species, these species belong to the same genus (eg. wild, cultivars, landrances), and I will construct a pan-genome. S…
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script prepare and be able to launch processing with standard parameters.
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- [x] a pbs script to launch coolAdmin pipeline (stable version) that taking parameters (`lib_id`) and this script i…
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