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Hi,
I want to know usually how long does degust take to show graphs for WG results?
I am even running degust as a test for only 20 genes (2 replicates), but it is taking more than one hour.
Is i…
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# Requester information
Please provide the following information:
- Name: Allison Heath
- Affiliations: CHOP/KFDRC
# Request Details
Please provide the following information about what you wantin…
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We are currently using canine cDNA to create a generic exome sketch. Each exome kit seems to have its own range of possible enrichment e.g. Agilent SureSelect achieves 45-75% coverage, Nimblegen Exome…
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Hello, Dr. Ahn,
I recently applied TenSQR to reconstruct quasispecies on whole genome sequencing data from a virus sample (>20000X, 150bp paired end, Illumina). TenSQR outputted 10 quasispecies seq…
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**Is your feature request related to a problem? Please describe.**
When users polish long read assemblies with short reads, they tend to believe that the new consensus is always better than the origi…
gwl2 updated
3 months ago
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### Name of the tool
`picard CollectWgsMetricsWithNonZeroCoverage`
### Tool homepage
https://github.com/broadinstitute/picard
### Tool description
Collect metrics about coverage and performance o…
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**Is your feature request related to a problem? Please describe.**
I would like to be able to quickly determine what research article I should reference simply from looking at the output of `datasets…
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Dear Tobias,
I hope this message finds you well.
I am currently engaged in a project that involves tracking the insertion sites of a transgene in the mouse genome. The transgene in question is ap…
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From the Quarto "Selecting GVCFs for Aggregation" page of the MVP Whole Genome Sequencing Data Release 2 book:
```
Metric: Average per base sequence quality
Has value: 118711
Passed: 118531
Fai…
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When I did the first step with mirdeep2, which is to map the sequencing data to the genome, I encountered a problem:
First line of FASTA reads file is not in accordance with the fasta format specif…