Victorian-Bioinformatics-Consortium degust issues

Victorian-Bioinformatics-Consortium / degust

Deprecated : Use https://github.com/drpowell/degust

GNU General Public License v3.0

44 stars 15 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Fatal error: cannot create 'R_TempDir'

#56 carolineneof closed 2 years ago
1
How to modify MDS plots (95% confidence intervals, etc)

#55 bkramer88 opened 3 years ago
0
degust analysis- How long does it take?

#54 mahdieh1370 opened 5 years ago
1
shift+click on blocks of samples in Configure menu

#53 avilella opened 6 years ago
0
problems uploading large csv files to website

#52 avilella opened 6 years ago
3
is there a way to export the MDS plot as an svg image?

#51 avilella closed 7 years ago
1
Propagating fdrThreshold and fcThreshold settings to UI

#50 andrewjrobinson closed 7 years ago
2
Enhancement: make clear that degust-old webpage is the old one

#49 AnnaSyme closed 7 years ago
1
Error handing for incorrectly-specified conditions/replicates

#48 AnnaSyme opened 7 years ago
1
csv import error on beta website

#47 avilella closed 7 years ago
3
Error handling CSV with space after a comma.

#46 drpowell opened 7 years ago
1
problems uploading csv

#45 avilella closed 7 years ago
8
Add methods description to ODF export

#44 AMChalkie opened 7 years ago
0
MDS is not a PCA nor SVD

#43 amackey closed 7 years ago
3
graphics - counts (y axis) disapears from gene counts graph.

#42 AMChalkie opened 7 years ago
1
graphics - in the way of gene counts

#41 AMChalkie opened 7 years ago
0
Enhancement: Keeping track of input files

#40 AMChalkie closed 7 years ago
1
Enhancement: download CSV static link

#39 colindaven closed 7 years ago
1
NA in csv produces a data point without name and description

#38 AMChalkie closed 7 years ago
1
Enhancement: QC: sex genes

#37 AMChalkie opened 7 years ago
0
Enhancement: QC: Find outliers

#36 AMChalkie opened 7 years ago
1
line limit?

#35 macmanes closed 7 years ago
1
Enhancement: Plot all values for a selected gene / publication ready figure

#34 AMChalkie closed 7 years ago
5
Export differential expression results as ODF format

#33 AMChalkie closed 7 years ago
8
Auto set width of "Genes" table columns?

#32 tseemann opened 8 years ago
0
Cannot view data from configuration window

#31 JakeGoodall closed 7 years ago
1
http://www.vicbioinformatics.com/degust/ server down?

#30 AMChalkie closed 8 years ago
1
Export cpm in R table output

#29 AMChalkie closed 7 years ago
1
Wishlist: Upload from .gct file

#28 AMChalkie opened 8 years ago
0
cabal keeps saying packages not installed though they are indeed there

#27 n6151h closed 8 years ago
3
Sort KEGG pathways by name

#26 AMChalkie closed 7 years ago
1
Request: Add sample weighting

#25 AMChalkie closed 9 years ago
7
Bug ? Counts used as fold changes

#24 colindaven closed 7 years ago
4
Wishlist: package necessary css offline

#23 AMChalkie opened 9 years ago
1
build-tests.sh fail with a type error on OSX

#22 vixr closed 9 years ago
3
Export .gmt

#21 AMChalkie opened 9 years ago
0
Need Help for Degust Tool

#20 rahdayal closed 9 years ago
2
values off scale (below minimum on Avg Expression)

#19 AMChalkie opened 9 years ago
2
Use KEGG GMT files from MolSigDB to automatically match gene/KEGG pathway relationships

#18 AMChalkie opened 9 years ago
1
Feature request: export counts-per-million

#17 colindaven closed 7 years ago
1
Wrong file name 'r_functions.hs'

#16 Bjoernsen closed 10 years ago
1
Modified embed to expose arguments, and main part of code as functions ...

#15 Slugger70 closed 10 years ago
0
convert_models.py script failed on Ensembl gff3 file

#14 lmanchon closed 10 years ago
1
Wishlist: Configurable axis labels and units

#13 pfh opened 10 years ago
0
Wishlist: Display average intensity in table

#12 pfh closed 10 years ago
2
Disable Heatmap clustering

#11 Bjoernsen closed 10 years ago
2
R packaged limma not found

#10 Bjoernsen closed 7 years ago
2
Duplicate instance declarations error

#9 Bjoernsen closed 7 years ago
6
Generate "print" quality diagrams

#8 drpowell opened 10 years ago
2
Embed parameters in URL

#7 drpowell opened 10 years ago
0