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Hello!
Is there any feature to iterate simultaneosly over two or more VCF? If not, it would be really interesting to develop it. Something like:
> Simultaneously iteratate over two or more VCF …
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I've been running Roary in order to use the presence/absence tables as input for training ML models (to identify sub-species groups based on shared genomic features). As I don't really care if genes a…
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Consider all steps : managed variants manual creating, importing using file and filtering. Think about what to do with already existing managed variants that have no build
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Hi @hannespetur
The genotyping accuracy of structural variants has a large impact on the subsequent analysis. Currently, I usually use `graphtyper (the latest version)` and `paragraph` to realize …
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junctions annotate command failed when using StringTie assembled GTF annotation file. Any solutions?
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**Is your feature request related to a problem? Please describe.**
There are a few formats that are uses less regularly which we need to develop code to handle
- expanded repeat syntax e.g. c.12_1…
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@AlaaALatif - thinking about this in response to the DL clean up, let's discuss
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Hi there.
I have downloaded the latest version (V4.14.1)
When using an annotated VCF (annotated using TabANNO) to specifiy variants to include in grouping, it results in an error:
FATAL ERROR -…
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**Background**:
- [Genome Nexus](https://www.genomenexus.org/) is a comprehensive resource integrating variant annotations from more than a dozen sources relevant to cancer. The annotations can be a…
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@mari-ga and @wxicu please modify the section on minimum required inputs following this:
The hashing and genetic mode are two independent workflows, and the rescue mode allows to perform joint demu…