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Hello there,
would it be possible to add a low memory mode for the --derep_fulllength command? Many metabarcoding pipelines need a global dereplication before clustering or denoising. For a large f…
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Hi,
I would like to know if your method can apply to COI metabarcoding data sets resulting from Ion Torrent sequencing technology.
Regards,
Najoua
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### Description of feature
Hi (again, sorry).
We would like to test ampliseq with CO1 data as an automated generic metabarcoding workflow, however no CO1 taxonomic databases are currently implemen…
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**add MBMG**
Requested by Pensoft: please add MBMG journal with its metircs and price to the list.
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Github user: @dschigel
User: [See in registry](https://www.gbif.org/api/feedback/user/9e8dec…
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Autogenerated report:
```json
{
"name": "Error",
"message": "Error trying to execute raxml binary '/tmp/.mount_raxmlGw2KeKS/resources/static/bin/raxml-ng': spawn /tmp/.mount_raxmlGw2KeKS/resou…
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The "About" page, http://oomycetedb.cgrb.oregonstate.edu/about.html source https://github.com/grunwaldlab/OomyceteDB/blob/master/website/about.html says:
> # How to cite
> A manuscript for submiss…
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- [x] Lesson Development & Review
- [x] Pilot Workshop
- [x] Lesson Development & Review
- [x] Scale Up
- [x] Analyse feedback
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Hello!
I am so happy to have found this page - I have been trying to separate demultiplexed sequences using ngsfilter for so long, and this code has been so useful!
I have unfortunately hit a prob…
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Hi Emmanuel,
I have a set of sequences derived from metabarcoding that I want to use to reconstruct a haplotype network. However, I encountered a problem, since the sequences all return unique haplot…
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Hello,
I'd like to test the divergence within individual over time in my metabarcoding data from a phyloseq object. I used the tuto found here : https://microbiome.github.io/tutorials/Betadiversity.…