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bensutherland
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eDNA_metabarcoding
Pipeline to analyze eDNA metabarcoding samples (PE and SE, demultiplexed, multiplexed)
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00b_split_by_type.sh - grepping issue
#8
midwesternmouse
closed
2 years ago
7
The cp -l script isn't well defined enough,
#7
bensutherland
opened
6 years ago
0
In single-end data, with lower denoising, obitab will not see the *_HS.fa file
#6
bensutherland
opened
6 years ago
0
The solution using 'unidentified' results in the need for an extra subsequent script
#5
bensutherland
opened
6 years ago
0
Different script required for read merging for multiplexed or demultiplexed?
#4
bensutherland
opened
6 years ago
0
Does the input need to be .fastq.gz or .fastq ?
#3
bensutherland
opened
6 years ago
0
SE data - the cutadapt output file name is needed for scripts
#2
bensutherland
opened
6 years ago
0
Extra unneeded folder for samples in SE data analysis
#1
bensutherland
opened
6 years ago
0