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There was a blog post from MONARCH detailing how to parse the MONDO data to get "rare" disease classification
https://mondo.monarchinitiative.org/pages/analysis/
Jim Balhoff rewrote this blog post…
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This needs to be documented (and linked to from monarch technical stack docs)
Basic summary:
the annotator is generic (compared to a fine-grained annotator like biolark that is specific to HPO).…
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http://dbpedia.org/page/Ivan_Asen_II has very poor info.
Wikipedia https://en.wikipedia.org/w/index.php?title=Ivan_Asen_II_of_Bulgaria&action=edit uses `Infobox monarch`
and that's mapped http://m…
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We need to update https://github.com/Knowledge-Graph-Hub/kg-registry so that we can better track knowledge graphs and modular graph components.
We should stick with the registry.yaml as the founda…
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I thought I'd come up with a great solution to allowing Ortholog Phenotypes, showing a checkbox to include ortholog phenotypes as well.
Unfortunately, there's no way to get to the checkbox if th…
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When I use DBGAN model for Link prediction, the following error occurs：
Traceback (most recent call last):
File "C:/Users/Monarch/Desktop/DBGAN-master/DBGAN_link/run.py", line 14, in
runne…
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During automated documentation of the repos, can we also provide a breakdown of the GitHub Actions used? In particular, we'd like to see list of all actions we reuse to provide a safety assessment.
…
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### Reproducible in vscode.dev or in VS Code Desktop?
- [X] Not reproducible in [vscode.dev](https://vscode.dev) or VS Code Desktop
not sure
### Reproducible in the monaco editor playground?
…
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Engase KO rescues phenotype of Ngly1 KO, http://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1006696
we don't have this in Monarch
https://monarchinitiative.org/genotype/MGI:5896…
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We do not have a definitive solution yet for ClinGen, but we will pursue the following paths:
1. Add a release product (subset) to Mondo which contains only the information relevant to ClinGen (gen…