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Hello GATK team!
## Bug Report
### Affected tool(s) or class(es)
mutect2
### Affected version(s)
- Latest public release version: 4.2.6.1
### Description
getting fail for all scatt…
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Hi,
Firstly, thank you for your great work. You have opened up a new single cell transformer pretraining paradigm, which is very inspiring.
I'd like to ask if the checkpoint you released was tra…
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@Clare72 (FlyBase) has kindly started a review of alignments between DPO and PHIPO. Here are her notes:
DPO | PHIPO | Label DPO | Label PHIPO | Alignment | Note
-- | -- | -- | -- | -- | --
FBcv_0…
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Thank you for sharing the code! It’s a valuable contribution to the community, as it will help reproduce the HE+ST experiments.
I do have a concern regarding the use of positional information. Intu…
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I wanted to open up a discussion for what we consider needed for a 1.0 release. I think the core code is shaping up to be solid and getting tested well in a number of environments. Is there anything f…
MSeal updated
4 years ago
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A couple of questions that came up in an iReceptor Plus meeting today:
- From an ADC perspective, repertoire_ids are typically unique within a given context (in the ADC they are unique within a rep…
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### Context
Salmon assumes that the reads you give it are in a random order -- see the first **Note** [here](https://salmon.readthedocs.io/en/latest/salmon.html#using-salmon) in the Salmon docs…
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The goal of this issue is to list and discuss trajectories from the literature to implement. I gathered a bunch of articles, and I would be curious to know
- Which ones should be prioritized ? (would…
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Hi all,
Thank you for this amazing tool and resource!
I had to make a few modifications to get it installed on Windows 11 with Python 3.9
I created and activated a new environment,
```
conda …
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Hi Zeyun and Nick,
Thanks for developing this which is super useful. I want to note on the inconsistency between
https://github.com/mancusolab/ma-focus/blob/fa8153d742327a3469436d529af9ce4a24a1e…