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Hi, I am trying to use some HiFiasm diploid GFAs from this public location:
https://s3-us-west-2.amazonaws.com/human-pangenomics/index.html?prefix=submissions/fc721e22-1ce2-4d38-bf88-72cf231bcb90--UC…
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## Short description of the problem
`anvi-pan-genome` won't rerun w/ cached previous results. Chatted w/ Meren about this briefly on Slack & was asked to report here.
## anvi'o version
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A…
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Hi,
In the first version of the ReadMe file, you also provided the link to HG002, HG005, and HG00733 raw nanopore and base called reads. However, those links are not available anymore.
https://s3-…
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I cannot open the network:
http://www.bio8.cs.hku.hk/clairvoyante/orginalData_hg001/ont-hg38-minimap2-rel6/rel6_hs38d1.sorted.bam,
how can i get the BAM file?
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## Description of the bug
My input FASTA files have the following name structure: `ncbi_covid19.[0-7].fasta` and contain about 5k RNA viral genomes each.
## Steps to reproduce
Steps to reprod…
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Dear developer,
I'm running command "anvi-pan-genome" and got stuck below. It output some warnings but still running until the last line with "ETA: 44s" that hold there for over 1day without progre…
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## Short description of the problem
I get errors about invalid p-values when running `anvi-compute-functional-enrichment-in-pan` with the `--include-gc-identity-as-function` option.
## anvi'o ve…
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**1. What were you trying to do?**
Map simulated error-free paired-end short reads to minigraph-cactus graph using Giraffe.
**2. What did you want to happen?**
Finish the job without error.
**…
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it seems longphase will treat unphased longshot output vcf files as already phased, and will not proceed further.
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Hello Marcus!
Megalodon has been working splendidly, so this is more so a question.
With our bedmethyl output files, we are trying to do some validation on the results, so we have an idea of th…