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Hello!
Thanks so much for developing this script, it has been great for me to be able to used lostruct on my low coverage data!
I am working with a bunch of different species and for some of them,…
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Hi Chen,
This is my plot, I have paired data inputted. But it seems to not plot paired lines for all. I have tried it with peerj32.obj and it worked fine. Wondering if you can help?
Thanks
Ke…
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Hi,
You probably have this, but i couldn't find it in your documentation or you code, but is it possible to generate a `loading` or `biplot` following `amp_ordinate`?
I'm looking for something l…
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Hi!
I'm trying to do PCoA on my microbiome data following the OMA manual but I get this error for MDS. What am i doing wrong?
> # Perform PCoA
> colData(x2)$ER_status colData(x2)$ER_status
…
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Summary of request: Add a new organization to ROR
Name of organization: Arctic Goose Joint Venture
Website: https://www.agjv.ca
Link to publications:
Organization type: Other
Wikipedia page: h…
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Recently, had a discussion about showing inter-individual variation in ordination plots. The figure 1 of this manuscript.
https://cancerpreventionresearch.aacrjournals.org/content/13/5/463
```
…
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I updated my nextflow installation to version 23.10 and now I get the error below when running the test data (`nextflow run main.nf --input data/test_data/test_sample.tsv --metadata data/test_data/tes…
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Hi,
Thank you for the release. I am doing a research of comparing different normalization methods in terms of downstream machine learning model prediction performance, and I would like to use the cou…
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### Description of the bug
FYI, **ASV_seqs.fasta** is present in the work directory (b12ddbfb05b35bef6eb415cb9f1ef0). I've no clue on the origin of the error.
```
ERROR ~ Error executing process …
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I have my data and I sample_color_by a categorical variable (Site) in my metadata.
Site has 10 levels
Ctrl, H0, H1, H2, H3, H4, H5, H6, H7 and H8 site
Then I give it a vector, to assign a colo…