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Dear Sir
When run the driver with LMS511 would report a fields number error, please refer to below photo.
![Error](https://github.com/SICKAG/sick_scan_xd/assets/97651961/5e0dd136-9228-41cf-b195-34…
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Hello,
I was trying to test sopa with a single FOV from my dataset in order to see everything is working, to do so I created separate file versions of each of the CosMX output files for a single FOV …
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Hi,
I am tinkering with a new conflict resolution strategy.
I wrote a cli that takes as input a Spatialdata folder and a directory of .parquet segmentation files.
After resolving overlaps I t…
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When a patch is very small, this edge case can happen, which leads to:
`ERROR: Not enough prior cells pass the min_mols_per_cell=10 threshold. Please, specify scale manually.`
A temporary (but bad…
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Hello,
I am trying to make an application based on the provided sick_scan_xd_api_test.py program. It will run on windows with no ROS. All I want to do is connect to the picoscan, receive scan data …
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Hi,
when trying to read in a MERSCOPE results I'm getting the following error
Cell In[10], line 1
----> 1 sdata = sdio.merscope("/allen/programs/celltypes/production/mfish/mfishmerscopemouseatl…
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### Comu…
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Along with CosMx, I believe the Xenium input files have also changed. It looks like in the current sopa version, it still searches for morphology_mip.ome.tif; however, in the new Xenium outputs they n…
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Writing MERSCOPE data may use a lot of RAM. This is because the `.tif` image chunks are not detected when using `imread` from `dask_image`, so the full image has to be loaded during image writing.
…