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Dear sarek community,
I used the pipeline several times and I always found this bugs using Mutect2.
## Description of the bug
GATK Mutect2
I found that among the pipeline there are two diff…
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**Feature**
It is necessary to restructure and redefine some of the tags used by BALSAMIC, as well as to update the .hk files according to the new version `v8.X.X`.
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This issue can be clo…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/danro9685/RESOLVE
Confirm the following by editin…
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https://mp.weixin.qq.com/s/Sap6_HXUMO7J0FWEaoVvZA?from=singlemessage&scene=1&subscene=10000&clicktime=1673276853&enterid=1673276853
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Dear team,
I am running inferCNV 1.13.0 and that error occur at step 20.
I use the command:
```
infercnv_obj traceback()
8: file(file, ifelse(append, "a", "w"))
7: cat(res, file = file, append…
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Hi!
I was wandering whether this nice tool could also be applied to bulk RNAseq data, with a number of samples ranging from 100 to 1000.
Thank you very much!
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Updating this ticket with the latest histologies:
There are some minor issues with the merged histologies file that we can discuss in the next toolkit meeting. Using the latest merged histologies f…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/danro9685/SparseSignaturesPlus
Confirm the follow…
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### Feature ###
Adapt `Scout` to display the `BALSAMIC` generated [ascatNgs](https://pubmed.ncbi.nlm.nih.gov/27930809/) PDF report for **tumor-normal WGS analyses**, which contains the main ascatNg…
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Hi,
We would appreciate if we could get the ikon to download .vcf.cgh files for all the samples analysed with balsamic in cust087.
Regards, Aleksandra