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This ticket tracks the whole discussion on how the data has been modelled and parsed to be part of our target-disease evidence data sources as of the 21.09 release.
I'm copying here all the comments …
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Unable to load the full CMap data (just the CMAPsmall example)
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First of all, thank you for developing this framework. I tested the deepdta-toy and I was not super sure how to find the affinity values of interest. I used the exact same files as the ones in the dee…
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Hi,
if i have interactions (Drugs-targets) with other organisms (not human), is it possible to run the training model?
or it is specific for human?
thank you!
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I think I am running out of memory even with 392GB for running standard pipeline for molecules size of ribociclib (62 atoms). The input for python poltype.py is:
```
structure=ribociclib.sdf
scrat…
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The python API script in your API pages doesn't seem to work due to some encoding ascii/utf-8 issues (at least if not printing the output to the terminal).
I think:
` def print_response(self):
…
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It is not obvious from the repository how https://github.com/huihui1126/drugSim-pathway/blob/main/combine_score.txt was generated. The code that generated it should be included in the repository or if…
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Hi,
I'm wondering is the associations in BioLink model going to distinguish experimentally validated results against computational predicted results?
One example would be the 'ChemicalToGeneAsso…
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The goal is to link drug names in PharmacoDB to a link to the Drug name in DTC. Probably no need to store their SQL dump, just need to have the correct links, maybe from their API?
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#### Your system information
* System information from steam: [System information](https://gist.github.com/KeironO/943eab8d232b95384b01e656e584f55f), but no longer running in Flatpak.
* Have you c…