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Hi @rmhubley and everyone,
I finished several rounds of RepeatModeler, but I have an error in the RepeatClassifier step. It seems I am missing several required files for RepeatClassifier: `RepeatP…
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It would be good to replace ```List< TableRows > ``` , with a more complex TableModel class. i.e. one that could retain more information about where to load and store parts of itself.
This would si…
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To facilitate the exploration of the summary statistics and development of downstream analyses, it would be fantastic if we can provide (secure) API access to summary statistics data. People should be…
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I'm going to try looking into this, but in the meantime though I'd report it. Here's the output from my test run after following the documentation.
$ nextflow run companion -profile docker
N E X …
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Quoting https://wwwdev.ebi.ac.uk/ena/submit/webin/app-checklist/sample/true while preparing to upload some samples, having selected the "GSC MIxS miscellaneous natural or artificial environment" check…
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When defining an input file with a validator for sequence input files the following way:
```
parser.add_option(options.queryFile, 'q', "query", "Query sequences.",
seqan3::option_spec::REQUIRED,
…
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I have noticed on some EBI groups that header links looks broken, when we clear the API cache from admin and then refresh the page fixes it. My understanding was API cache is set for certain interval …
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@KateMoreva
This is already interesting: https://github.com/mobie/bigdataviewer-ome-zarr/tree/main/src/main/java/de/embl/cba/bdv/ome/zarr/source
I see that we need this here, but we also need i…
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#### Summary:
The current cache access is handled through hard-coded SQL statements. This should be reimplemented as an ORM using SQLAlchemy.
Also, UniProt can return multiple EMBL entries for a s…
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Dear Daliang Ning
You developed a very good R package, but I encountered some doubts in the specific application. Based on the sample data you provided, in the result folder TestOutputs, I did not f…