DaliangNing iCAMP1 issues

DaliangNing / iCAMP1

Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)

GNU General Public License v2.0

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issues

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how to change the control and treatment groups when doing a bootstrapping analysis using icamp.boot?

#67 kangluyao opened 1 month ago
2
What is the term dij in equation (9)?

#65 ZeweiSong opened 2 months ago
1
Problem creating filebacked matrix in the use of the pdist.big function.

#64 DrZhangjilin opened 3 months ago
1
icamp.big debug problem

#63 sssbishop opened 3 months ago
2
Optimizing Binning: MeanR vs. RAsig.adj?

#62 gus-pendleton opened 3 months ago
1
Extremely fast phylogenetic distance computation

#61 jianshu93 opened 3 months ago
1
Interpretation questions

#60 Hewang11111 opened 4 months ago
1
How to build a bin level phylogenetic tree

#59 xcljnu opened 5 months ago
1
Fatal error: Exit code 1 () Now computing path. begin at Sat May 11 22:04:08 2024. Please wait... Error in checkForRemoteErrors(val) : 2 nodes produced errors; first error: subscript out of bounds Calls: ... clusterApply -> staticClusterAp

#58 kelly-xia opened 6 months ago
2
Error in utils::combn(sampik, 2) : n < m Calls: <Anonymous> ... lapply -> FUN -> t -> sapply -> lapply -> FUN -> <Anonymous>

#57 makerer5 closed 7 months ago
0
I couldn't the find the function 'big.mantel.correlog'

#56 devarajarun closed 7 months ago
1
requirement of the sample number

#55 Gu2uMo closed 7 months ago
2
Protocols for using HPC?

#54 cckeneally closed 7 months ago
3
erro Now summarizing method=CbMPDiCbraya i=1 j=1. Sat Mar 9 23:34:20 2024 Error in oldname[j, 1:2] : subscript out of bounds

#53 Panda-smile opened 8 months ago
16
icamp.bins - arguments imply differing number of rows

#52 mgabriell1 closed 7 months ago
2
Stuck at phylogentic signal testing

#51 jonaskohh opened 9 months ago
2
How to get the category information?

#50 XELong closed 9 months ago
2
Is it necessary to rarify the count data before starting iCAMP analysis ?

#49 sankadinesh closed 7 months ago
5
Error in checkForRemoteErrors(val)

#48 chenyj8 closed 10 months ago
3
Error in UseMethod("is.rooted")

#47 makerer5 closed 11 months ago
3
The issue with step"binps=iCAMP::ps.bin"

#46 linxuanhuogatech closed 11 months ago
2
Hi, professor Ning, I would like to ask you about the operation of iCAMP code

#45 Jia2023888 closed 1 year ago
2
Hi, Daliang

#44 DUANZIHAOO closed 1 year ago
2
Question about results of QPEN

#43 qingyu-wi closed 1 year ago
2
How to get the results of each ecological process of each bin between each two samples

#42 Ryeguyuzheng closed 1 year ago
3
Error in serialize(data, node$con) : ignoring SIGPIPE signal

#41 hahamark-learn closed 1 year ago
5
How to evaluate the different results resulting from different methods

#40 diego00012138 closed 1 year ago
4
Process in "D" state on NFS filesystem in a HPC environment

#39 melop closed 1 year ago
2
Error in GetElements.bm(x, i, j): Illegal row index usage in extraction

#38 huizhen-yan closed 1 year ago
3
Dealing with dataset with four metacommunities

#37 adityabandla closed 1 year ago
2
Some confusions in using iCAMP

#36 leozhangya closed 1 year ago
2
Error shows" Error in checkForRemoteErrors(val) : 2 nodes produced errors; first error: subscript out of bounds"

#35 Xiaojie0607 closed 1 year ago
9
Can't find the help documents

#34 Joshcole2504 closed 1 year ago
1
Error in oldname[j, 1:2] : subscript out of bounds

#33 Xiaojie0607 closed 1 year ago
7
Metagenomic data could be used for iCAMP?

#32 LiZhihua1982 closed 1 year ago
1
X nodes produced errors; first error: 'size'参数不对

#31 Zhenghong-Wang closed 1 year ago
8
issue with icamp.big

#30 phillwatts73 closed 1 year ago
1
missing values are not allowed with argument 'na.rm = FALSE'

#29 liyangyang200112 closed 1 year ago
4
Solution to large dataset?

#28 chenyj8 closed 1 year ago
3
Error in h(simpleError(msg, call)) : when running icamp.big

#27 LuffyLuffy closed 1 year ago
6
Results of bin.size.limit parameters to12 and 72 were same

#26 YuZhang-learner closed 2 years ago
12
Error in checkForRemoteErrors(val) : 2 nodes produced errors; first error: subscript out of bounds

#25 YuZhang-learner closed 2 years ago
5
an issue in bNTI.big.r

#24 ChiLiubio closed 2 years ago
1
unsolved problem

#23 WeichuanLin6688 closed 2 years ago
5
Error in oldname[j, 1:2] : subscript out of bounds

#22 INFINITY1993 closed 2 years ago
5
Out of memory?

#21 nicholascdove closed 2 years ago
9
Some questions about OTUs in each group

#20 zhangy-zy775 closed 2 years ago
2
Mismatch in values between vegdist Bray distances and RC.pc CB.obs

#19 MagdaGarbowski closed 2 years ago
2
Error occured while runwhile bNRI.bin.big

#18 PicaPicaLX closed 2 years ago
5
core, rare and other taxa

#17 pedres closed 3 years ago
2