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Hi,
Problem of compilation with new version of gatb-core v1.2.1 : something related to `struct hash` in `LargeInt.hpp` (commit 6d9525e89b8cb8e3b15dda32f6d2086333e27b01)
Compiler : clang 4.1 on mac
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I am trying to install bcalm2 on my Macbook. I am facing issues while compiling the code. More specifically while running the make command. I am using gcc 5.4. These are the steps that I took to build…
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```
% minia -in SRR1661276_R1.fastq.gz -out-dir minia
HDF5-DIAG: Error detected in HDF5 (1.8.11) thread 0:
#000: /builds/workspace/tool-minia-build-debian7-64bits-gcc-4.7/gatb-minia/thirdparty/gatb…
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compilation of MindTheGap with clang v7.3.0 does not work since commit a4438e32f3001739e87a72ff6d61f516f59db646 (19 mai), probably because of this code removed
if (CMAKE_CXX_COMPILER_VERSION VERS…
rizkg updated
8 years ago
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When trying to compile and test using `make test`, the compilation stops with an error related to samtools:
$ make test
...
(2016-05-25 13:57:31) Execution of 'python BESST/scripts/reads_to_ctg_map.p…
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Hello,
when I compile gatb-core with clang, several potential errors are reported. I think that they are real errors. See this log:
```
In file included from /Users/karel/github/metang/proc/main.cpp…
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Hello,
I tried to use BCalm on this [small_example.zip](https://github.com/GATB/bcalm/files/141100/small_example.zip) with k=41 and it did not work (for k=31, it works perfectly though). The BCalm st…
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Problem is in ographBin:
```
DSK created 32 partitions
[Iterating DSK partitions ] 0 % elapsed: 0 min 0 sec remaining: 0 min 0 sec
Partition 0 has 1518 kmers
Iterated 151…
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Very good idea but implementation is not the best. Took me quite a while to get Training.py to run. Added some error handling to the subprocess.checkcall() commands. Also, code does not work with new …
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```
% ./bcalm
Test n:1000 k:20 m:4
GO!
importg
Segmentation fault (core dumped)
% echo $?
139
```