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Dear Owen,
This time I have a question about the peaks2genes script. I was wondering about the peak values (second column) of the output .csv files. How one should implement these values? It seems th…
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Is the intent to rigidly stick to the bed format from tophat or are you currently ignoring column 7?
If it was possible to indicate a junction is to a different chr using a tag and an arc that extend…
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Hello.
I used STAR-Fusion to know the fusion coding sequencing of the fusion gene.
Starfusion version is 2.10.0v and STAR version is 2.7.8a.
To know Fusion CDS, I ran Star Fusion with the --…
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In MSK-IMPACT Cohort:
- [ ] Archer results are currently shown as a separate record on the [Patient view](https://cbioportal.mskcc.org/patient?studyId=mskimpact&caseId=P-0037751). Should we leverag…
inodb updated
8 months ago
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Hello, I am currently testing JAFFAL and other long-read fusion finding tools on a simulated dataset ~generated using badread to simulate reads and FUSIM to simulate fusions (including tri-fusions).
…
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**Is your feature request related to a problem? Please describe.**
Currently it is not clear how mehari compares feature-wise to other available solutions.
**Describe the solution you'd like**
Id…
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Issue by @MaxUlysse, moved from SciLifeLab#666
- [ ] [ExpansionHunter](https://github.com/Illumina/ExpansionHunter) for estimating repeat sizes
- [ ] [QDNAseq](https://github.com/ccagc/QDNAseq) CN…
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Error, no seek pos for acc: 10_GL456015_alt at /home/tej/envs/DeepMod/anaconda3/envs/starfusion/lib/STAR-Fusion/FusionFilter/util/../lib/Fasta_retriever.pm line 71, line 214623852.
Fasta_retriever:…
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Hi @hattrill
Can you provide PMIDs (or other sources) for the following fly terms? These links are dead.
- [ ] GO:0045498 | sex comb development | The process whose specific outcome is the …
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Hello,
I run starchip on Ubuntu 16.04
I've started to use Starchip-fusion.
I ran it with default parameters.
There is a problem with output files.
After a successful run, out.summary and out.su…