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Hi @ctb the sourmash author,
Currently we are working on using your tool to find the representative MAGs within a customed data set assembled from several deeply sequenced stool shotgun samples. Th…
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Hello!
I am trying to run your pipeline following your examples to create snap files but had a few errors:
1) When running the **index-genome** and the **align-paired-end** commands, I had tab/sp…
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I downloaded some courses but all of them only had 360p videos. Is there any option to increase the resolution of the videos?
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Small question on your API. Adding minhashes in a custom (e.g. duck-tapped) genome sqlite database, my sequences seam to have non-standard bases (not ATGC, like N, K,R and so on) I know that your stan…
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I am running STRaglr 1.5.0 (the current release) and get the following error on multiple CRAMs:
```
python straglr.py NA19676.hg38.cram ../1KG_ONT_VIENNA_hg38.fa NA19676.hg38_straglr_patho --loci …
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One of the problematic data sets is analysed here:
/mnt/gpfs/Hackathon/StrainMetaSim/CoAssembly55
The binning is very poor prior to merging. Just 9 good bins at 75% completeness. See file:
cl…
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Hello there, using the sample dataset I run the test run in order to see if all works, but not.
Here the command and the output i get:
> ./tools/bin/bpipe` necklace.groovy data/data.txt`
WARNING…
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Hi,
Thank you for the wonderful tool. I wonder if it is possible to modify VAE's loss function the following way.
Say in a binning job, as auxiliary information from alignment, we know that so…
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Hi,
I am using Bayestyper to genotype my yeast strains after the clustering step but I'm getting an assertion failure error. I ran `bayestyper genotype` with the --noise-genotyping parameter due to…
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so we have a basically a prototype of what the visualisation could be like,
now we need to build the api that goes with it
so we need to document what data the UI needs, and how they would like it…