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Hello,
I see that any figures using pyGenomeTracks are not included in this Github space (please correct me if I missed this). Is this available somewhere else?
1) I'm specifically interested …
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Hi!
I'm still working with hicexplorer and i have questions about plot. I can't succeed to plot nice and clean plot. I don't know if it's because i didn't produce nice matrix or if i'm not using pr…
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Hi, Thanks for the great tool. I am running into the below error when I run make_hicexp:
Error:
`Error in vec_slice(x_out, x_slicer) :
long vectors not supported yet: ../../src/include/Rinlin…
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Hi !
i'm using hicexplorer and i'm trying to plot HiC data with genes but something definitly wrong..
i'm using this file hic_track.ini:
[x-axis]
where = top
[hic matrix]
file = C1829A_…
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Hello,
I am trying to run nf-core/hic on cow. It worked on the 1.2.2 with this command line:
```
nextflow run nf-core/hic \
-r 1.2.2 \
-profile genotoul \
-name v1.2.2 \
--input '/work/nmary/Bo…
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### Description of bug
Trying to run multiqc on fastp json/html output but it fails with the message "No analysis results found".
I tried running both the conda install v1.14 release and then the …
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Hi,
I am using HiCexplorer hicAggregateContacts function to get the contacts between a set of genomic positions (.bed file).
head of my bed file:
> chr3R 11371536 11373001
> chr3R 16249423 …
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Hello,
I was just wondering whether pyGenomeTracks can plot compartments based on Hi-C contact matrix?
Best,
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## Description of the bug
The pipeline ends during the bowtie process with this error message at the end of the log:
> Unexpected end of ZLIB input stream
>
>
> java.nio.channels.Close…
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