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Based on the [MAESTRO paper](https://genomebiology.biomedcentral.com/articles/10.1186/s13059-020-02116-x#Sec12), my understanding is that a peak that is in the exons or promoter region of more than on…
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Hi,
Thank you so much for creating DIA-NN. I am new to this tool. I was trying to generate a predicted spectral library from a FASTA file. To access the library properties I loaded it in DIA-NN r…
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Hi,
I am currently using FLAMES and a few other assemblers (flair and bookend), to compare them against each other and find out, which would be the most optimal one for my data and workflow (drosophi…
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Hello,
Thank you for setting up this repo! I was wondering if this data has been published yet and if so what paper we can cite to use this data?
Cheers,
Richard
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While filtering transcripts , I get the following error message:
##########################
Use of uninitialized value in numeric lt (TRINITY_GG_3_c0_g2_i1 len=1175 path=[1:0-70 2:71-178 3:179-20…
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Sample-specific sorted BAM files can be found in each sample-specific subdirectory here:
https://gannet.fish.washington.edu/Atumefaciens/20210726_cvir_stringtie_GCF_002022765.2_isoforms/
There's…
kubu4 updated
2 years ago
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I am attempting to execute the "transcriptTranscript-level Workflow" as described in the [Spycone documentation](https://spycone.readthedocs.io/en/latest/alternative.html) on a Linux system using Pyth…
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**Context**
NS-Forest algorithm identifies minimal combinations of marker genes that can accurately classify and define cell types from single-cell RNA sequencing datasets. We need a design pattern t…
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The xml chunk for this variant is:
```xml
current
NM_000162.5(GCK):c.449T>C (p.Phe150Ser) AND Maturity-onset diabetes of the young type 2
current
criteria provi…
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Hi,
Thank you for the really nice software! I do have an issue with getting proper gene names out from a FASTA file, and have not been able to find any information regarding how the gene name is r…