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Is there any function that can enable to visualize the paired end links between two pair ends. Just like the broad IGV did, it is quite important to visualize the linkage of pair end sequence to under…
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This would potentially create plugins that are incompatible with jbrowse 1.x but it may be useful to keep deps updated
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The update to Apollo2.6.0 and more modern JBrowse has required us to update our CSS.
Instead of loading this as a plugin, the JBrowse and Apollo developers suggested I have the CSS in a common loc…
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Converting our codebase to typescript is a pretty "low cost" way to ensure things at least pass some typechecking
Most of our codebase is already typescript (yay) but some remains
Non-test fil…
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When looking at e.g. GWAS data, it may get the feature density is too high error but we want to override that. The jbrowse-plugin-gwas may want to ignore the feature density somehow, but currently, i…
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Made a list of 404s in the docs using linkchecker (https://linkchecker.github.io/linkchecker/) and converting to markdown table https://www.convertcsv.com/csv-to-markdown.htm
|urlname …
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**Is your feature request related to a problem? Please describe.**
I am trying to deploy jbrowse2 to share views on assemblies and annotation tracks without sharing the data files behind them. I ha…
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I would like to color code the dots in the Manhattan plot by GWAS trait (my data files have a 'trait' column). For a LinearBasicDisplay, adding the following code to config.json works as expected:
``…
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In this dialog, when a user uploads a file and the file type can be detected, toggle the radio button to the detected file type. File type may be detected by name and/or contents (up to the implemente…
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Since we want basically everything to be configurable, we're going to need a way to load things like plugins from user-defined sources. With [dynamic imports](https://reactjs.org/blog/2017/05/18/whats…