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## Coral Reef Ecosystem Program (CREP) Coral reef fishes
Region: U.S.-affiliated Pacific Islands
Taxon: Marine
Type: sampling event
Internet link to data https://www.pifsc.noaa.gov/cre…
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@yvanlebras @ColineRoyaux indicated they'll have a few new tutorials ready for us for Smörgåsbord 2
## Biodiversity data handling and visualisation
- [x] **Feb 28** Merge to GTN: [Need to devel…
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Hi,
here the session info:
> library(breakaway)
> library(phyloseq)
> library(magrittr)
Warning message:
package ‘magrittr’ was built under R version 4.1.3
> library(tidyverse)
-- Attac…
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Hello!
Congratulations on developing this neat solution to work with the new FTP directory. It's a time and lifesaver!
I wanted to ask if there is a way to batch download only complete mitochond…
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cutadapt 3.7 installed with conda and run through a conda environment
python 3.9.13
I have short (~ 225bp) metabarcoding reads that were amplified using a pair of 12S primers which have had differ…
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Issue Documentation is http://handbook.arctosdb.org/how_to/How-to-Use-Issues-in-Arctos.html
The new summarize by has lost many of the very valuable features of the old summarize by. Some issues bel…
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I think we should differentiate now into the Fox analysis we do with Caro (is she actually on github?) and the primer analysis we do for ourselfs...
Maybe fork this and merge it with my old AA_meta…
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In order to create a metabarlist file, I must create 4 different files (motus, pcrs,..).
How can I create those files starting from an Obitools3 output? In particullary, which files do I have to tak…
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### Description of feature
Hi, I have a couple of projects to analyse where the primers are degenerate and the last 3 or 5 bases have ambiguities that allow them to match the first 3-5 bases of the p…
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Hi @bachob5 @SantamariaMonica,
MetaCOXI is a very nice and useful database, thank you for developing it.
I would like to use the MetaCOXI_Seqs.fasta and MetaCOXI_Taxonomy_Metadata.tsv as input fi…