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### Expected behavior
The user should be able to invoke the metagenomics workflow from any arbitrary directory, assuming the correct absolute or relative path to relevant Snakefile(s) is indicated.…
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Hello.
I have been using Kaiju in KBase for my metagenomics data. I was hoping to stitch together all of my output files using Kaiju2table but I'm not sure Kbase outputs the files that I need to co…
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Hi,
I have a couple of confusion and questions.If I get some help it will be really appreciated.
1. When I am uploading my files it doesn't seem to upload and return to No file selected. Is there…
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In a comparison of metagenomic assemblies made only from illumina short-read data (metaSPADES) to hifiasm-meta assemblies (the primary contig file, .p_ctg.gfa), we found an ARG assembled in a metaSPAD…
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Hi! Thanks so much for this package.
I am working some rna-seq in the maine species without genome
Your guide presents all downstream analysis example and R scripts with genome index, so how to …
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> *[Filament](https://en.wikipedia.org/wiki/Galaxy_filament)* – A large-scale structure in the universe, consisting of a network of galaxies and galaxy clusters interconnected by dark matter and gas. …
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Dear Jie,
Thanks for this amazing tool.
I am using DeepVirFinder to find viral sequences from contigs from metagenomic data. But there was this error when calculating the q value using p-value:
…
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If all our emo bon data are in one set of crates, and different metagoflows in others, don't we need to provide a way for users (human and machine) to know what is where? I was in particular thinking …
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Hello, I'm interested in downloading metagenomic assemblies from MGNify in a programmatic manner. We've been testing out your API, but there seem to be inconsistent file naming patterns that make it d…
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hi，professor：
I read your paper with the name of A high-quality genome compendium of the human gut microbiome of Inner Mongolians, and I learned a lot from it about some analysis methods.
Now I w…