jessieren DeepVirFinder issues

jessieren / DeepVirFinder

Identifying viruses from metagenomic data by deep learning

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issues

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Can DeepVirFinder predict the host of virus sequences?

#51 h170607 closed 1 week ago
2
Need a GPU Version!

#50 SteamedFish6 opened 4 months ago
0
How to extract virus sequence

#49 mengyuan-JI opened 6 months ago
4
I tensorflow/compiler/mlir/mlir_graph_optimization_pass.cc:185] None of the MLIR Optimization Passes are enabled (registered 2)

#48 Betula0422 opened 6 months ago
0
the use of q-value in this project

#47 hwl26 opened 8 months ago
0
Encoding takes weeks to finish

#46 enricorox opened 1 year ago
0
DVF goes into sleep state

#45 SenyuanGu opened 1 year ago
2
[QUESTION] Support Python 3.7 or later

#44 alienzj opened 1 year ago
1
problem when running dvf on HPC

#43 leihuaxin opened 1 year ago
2
hello,I want to know how to set the -l parameter

#42 778055611 opened 1 year ago
0
training.py :: keras - tensorflow version requirements

#41 EricDeveaud opened 1 year ago
0
IndexError: list index out of range (by using trained model for viral sequence scanning)

#40 ichotofiy opened 2 years ago
0
Suggestion: Add mkl-service to conda install command

#39 erfanshek opened 2 years ago
1
Test module falling after installation

#38 geboro opened 2 years ago
4
File "/data1/qinjunjun/zhu_bingduzu/DeepVirFinder/dvf.py", line 212, in <module>

#37 qinjunjun opened 2 years ago
0
Make a versioned release

#36 telatin opened 2 years ago
2
issue installing using conda, python=2.7 required

#35 dluecking opened 2 years ago
1
Support gzip and bzip2 input

#34 alienzj opened 2 years ago
1
Results processing and extraction of region?

#33 bananabenana opened 2 years ago
0
DeepVirFinder isn't work post conda install

#32 raw937 opened 2 years ago
1
AttributeError: ('The following error happened while compiling the node', DotModulo(A, s, m, A2, s2, m2), '\n', "module 'numpy.core.multiarray' has no attribute '_get_ndarray_c_version'")

#31 linda5mith opened 2 years ago
3
Stuck on loading models?

#30 Joshcole2504 closed 2 years ago
2
Prediction refactoring

#29 jsgounot opened 2 years ago
3
Runtime Error during test-run

#28 ghost opened 2 years ago
2
DeepVirFinder gets stuck on some sequences

#27 runphaster opened 3 years ago
2
Refactoring of main loop

#26 cerebis opened 3 years ago
1
Update documentation for h5py API schism

#25 ryneches opened 3 years ago
0
Server's running time

#24 paulaistvan opened 3 years ago
0
ValueError: not enough values to unpack

#23 alexmsalmeida closed 3 years ago
3
filelog not imported

#22 askerdb opened 3 years ago
3
Running time

#21 rubenbucio opened 3 years ago
4
compiling the node error

#20 wolfQK opened 3 years ago
2
OSError: Unable to open file (unable to lock file)

#19 snayfach closed 3 years ago
1
AttributeError: 'str' object has no attribute 'decode'

#18 glickmac opened 3 years ago
1
Trained models for RNA viruses

#17 mlhoggard opened 3 years ago
2
How can DeepVirFinder ensure the accuracy of long contig predictions?

#16 ZongzhiWu opened 3 years ago
2
Data set Accession Numbers not complete

#15 nkarisan closed 3 years ago
2
Make deepvirfinder pip installable

#14 papanikos opened 4 years ago
0
Training on Windows

#13 andrewjmc closed 4 years ago
1
val_acc vs. val_accuracy

#12 andrewjmc closed 3 years ago
1
PermissionError: [Errno 13] Permission denied

#11 gabrielrfernandes opened 4 years ago
1
Score and q-value

#10 sxh1136 opened 4 years ago
0
HPC and DeepVirFinder

#9 soilmicrobiome opened 4 years ago
0
theano issue putatively related to the slowdown of the program

#8 ilnamkang opened 4 years ago
4
关于Training Data

#7 anothersum opened 5 years ago
0
Estimating q-values based on p-values, error in R

#6 miasungeunlee opened 5 years ago
3
q-value calculation issues and anti-conservative p-value distribution

#5 nikhilg123 opened 5 years ago
1
program uses more cores than specified

#4 snayfach closed 3 years ago
1
Training data

#3 snayfach opened 5 years ago
0
Error in calculating q-value

#2 denisbruno1 opened 5 years ago
5