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When we had the [original discussions about a new workflow format](https://github.com/OCR-D/spec/pull/208) to replace the de-facto standard `ocrd process` syntax in the core implementation, there was …
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This seems to be an issue
logs are here
`
Check script '/root/.nextflow/assets/likelet/LncPipe/LncRNAanalysisPipe.nf' at line: 1038 or see '.nextflow.log' file for more details`
logs are…
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Make Ridgeback handling of Nextflow pipelines parallel to how Ridgeback handles CWL/Toil
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## Bug report
### Expected behavior and actual behavior
The parameter resolution / prioritisation `main.nf` < `nextflow.config` < cli, doesn't work as expected for dictionaries which are defined …
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As a **community user** I want **to be able to understand how the Gentropy ariflow pipeline works ** because **I want to reproduce it with nextlfow.**
## Background
Background to this task is a res…
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### Operating System
Other Linux (please specify below)
### Other Linux
Rocky Linux
### Workflow Version
v1.5.0
### Workflow Execution
Command line (Cluster)
### Other workflow execution
_No …
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PR #95 made an environment variable that allows the user to write test results to a different directory. We've recently hit an issue where the testing input data may also need to be in a user-specifie…
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### Description of the bug
Hi all,
I am running BTK as a nested pipeline in ASCC using the odCymConc1_PRIMARY pre-decontaminated genome. However, it crashed with the following:
```
Command e…
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### Operating System
Windows 10
### Other Linux
_No response_
### Workflow Version
23.04.2
### Workflow Execution
EPI2ME Desktop (Local)
### Other workflow execution
_No response_
### EPI2ME…
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- Could `PYSTUFF `be called something more specific, please? Same for `RSTUFF.` It's better for readers if short, descriptive names are used.
- Could `myscript.py` be called something more specific, …