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See https://github.com/ome/ZarrReader/pull/31#issuecomment-1113459183 and https://github.com/ome/ZarrReader/pull/31#issuecomment-1113477796 for background.
First suggestion would be:
1. Any syste…
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Most of the names in the spec are ~~snake case~~ camel case. However, `image-label` is not, see https://ngff.openmicroscopy.org/latest/#label-md. Is there a particular reason for this?
If not, could …
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Following https://github.com/IDR/deployment/blob/master/docs/operating-procedures.md#bio-formats-cache-regeneration with step by step notes...
The instructions there distribute the work across all …
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### Zarr version
'2.16.0'
### Numcodecs version
'0.11.0'
### Python Version
'3.11.3'
### Operating System
Ubuntu 22/ Debian 10 (tried it on 2 systems with 2 Fiji versions)
### …
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Seb: "`test120` now deployed with OMERO.server and available at https://idr-testing.openmicroscopy.org/".
As discussed at IDR meeting 11th September, good to test `mkngff` with ALL the NGFF filesets:…
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idr0026-weigelin-immunotherapy
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See e.g. https://deploy-preview-36--ome-ngff-validator.netlify.app/?source=https://radosgw.public.os.wwu.de/n4bi-goe/Platynereis-H2B-TL.ome.zarr/setup0/timepoint0
cc: @will-moore @constantinpape
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**Background:** Earlier version of the tiff-to-zarr `convert` command would write all of the micromanager image plane metadata to text files. Micromanager writes metadata for each plane, so the result…
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(Following on discussion from https://github.com/ome/ngff/pull/85)
As schematized by @constantinpape [here](https://github.com/ome/ngff/pull/85#issuecomment-1044233185), the current (0.4) version o…
d-v-b updated
2 years ago
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**Is your feature request related to a problem? Please describe.**
We would like to start thinking about supporting [BioFormats](https://www.openmicroscopy.org/bio-formats/).
Bioformats is a pat…