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Hello, I've noticed that the workflow for the downstream task of Gene Perturbation Prediction has not been updated yet. May I inquire when the related update plan will be released? Or has it been canc…
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Bonjour,
Merci pour votre travail !
Pourriez-vous ajouter une option pour afficher le message de perturbation en instantanée (format de votre choix) afin d'éviter de l'avoir en défilé et diffici…
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### Brief summary of bug
We have the ability to perturb clay and sand percent (with `clay_pf` and `sand_pf` on the parameter file). However, after these values are updated, the sum of soil textures…
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Similar to #429 but using the LETKF.
We should expect a better understanding of:
- The quality of the static ensemble to represent background errors
- Profiling of the LETKF without the cost of run…
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**For which schema is a change/update being suggested?** MorPhiC
**What should the change/update be?**
I would like to add a new schema for a dataset. The entity will be in hierarchy one level …
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1、对于/scripts/ATAC/ATAC_DAP.R文件里最上方的
# path = '/home/sirm/graduation_design/snakemake_folder/Demo_data/ATAC/fragment_file'
# species = 'Hs'
这两个变量的设置是否需要去掉注释，并换成自己的。
（另外在ATAC的其他代码文件里，也出现以上的变量设…
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Matt proposed the following sea ice mechanism that may be damping the impact of our meltwater perturbation (in addition to the [30% damping by the salinity restoring](https://github.com/adele157/IAF-m…
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Genetic perturbations:
- [ ] gene IDs
- [ ] perturbation type: {KO, inhibition, over-expression}
- [ ] free text for vector specifics
small molecules
- [ ] Chembl IDs
- [ ] free text for conc…
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Sample along “discrete” disturbances/perturbation (oils spills, O2 excursions, hurricanes, etc..) Plankton, animal, benthic – depending on context). Viruses archaea, bacteria, protists….
Sample:
S…
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Something wrong at the step of "Get perturbation saliency map"
I found "visualize_atari/jacobian-vs-perturbation.ipynb" still cannot work through, at the step of "Get perturbation saliency map":
`…
daiyl updated
4 years ago