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* PIGT version:
* Python version: 3.9
* Operating System: centos
### Description
Ran:
```
neuralplexer-inference --task=batched_structure_sampling \
--input-receptor …
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After migrating from [bio_embeddings](https://github.com/sacdallago/bio_embeddings) to calculate embeddings directly in biotrainer for the provided sequences, it is now theoretically possible to allow…
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Hi everyone,
In this project, we have a bunch of experimental data on the binding of small molecules to WDR91. Many of the molecules are in nice matched pairs, in which the molecules differ by a si…
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We are benchmarking folding methods on predicting structures of proteins containing unnatural amino acids. We saw that you mentioned 'prediction for unnatural amino acids is coming soon' on Github, so…
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I used spaln to annotated a gene structure in de-nove assembly using a homologous protein, but spaln report error (Segmentation fault (core dumped)). The command as follow
spaln -Q3 -O0 -KP -C1 -M100…
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Hi,
Suggestions for new additions:
#### 1. MHCFlurry for perhaps being a potential brick for MHC 1 class proteins binding affinity.
- Repository: https://github.com/openvax/mhcflurry
- Pap…
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Thanks for the very interesting work and the code!
I wanted to try to get the Protein MPNN CMLM model running on one of the example PDB files.
I copied the code from the Readme, but appear to ha…
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dear all,
I've found the site to compare the protein sequences :
https://www.ncbi.nlm.nih.gov/Structure/bwrpsb/bwrpsb.cgi.
it's about comparing every protein sequence to the PSSM Database with RPS…
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**Bug description**
I installed esm using the conda environment
I Folded many proteins using the esm-fold command, however I have found some proteins with physically impossible structure.
**Rep…
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@Mindyporterfield and @senaarpinar are finalizing a tool for generating GlyGen CSV files for glycomics data. Please review the following ticket (especially the second half with the mandatory columns a…