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A summary of what we discussed today regarding PDB stuff @kimrutherford @ValWood
## Best structure
It seems the PDB identifies a "best structure" for a given gene depending on coverage + resolu…
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I pasted this PDB in the pdb file: [6e08.pdb.gz](https://github.com/user-attachments/files/17080143/6e08.pdb.gz)
And this was the email message:
```
Check twice before you click! This email ori…
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The following report refers to the difficulties that I had when I tried to embed a GPCR to a mixed DMPC/cholesterol lipid bilayer. Specifically, parts of the protein were seriously deformed after appl…
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Hi @nslavov ,
Thank you very much for your contribution regarding the single-cell protein data. I believe it will be of great assistance to my research. I am a Ph.D. candidate in bioinformatics, and…
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dear all,
I've found the site to compare the protein sequences :
https://www.ncbi.nlm.nih.gov/Structure/bwrpsb/bwrpsb.cgi.
it's about comparing every protein sequence to the PSSM Database with RPS…
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[ASAP-0015381](https://github.com/StructuralGenomicsConsortium/CNP25-CHIKV-nsP3-Macrodomain/assets/133207721/fca7cc25-1a3e-4edc-8abf-217449838c4c) is One of the ASAP potent inhibitors vis SARS-CoV-2-N…
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When comparing the input and output values, it seems that the output values represent the central residue number of each contig from the input.
For example, for the input range 27-32, the output is…
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Hi tfold team,
I applied tFold-ag to the AbDB dataset, and while it performs well on some proteins, I encountered difficulties predicting other proteins. Upon inspecting the predicted structures, …
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SIB curators are moving from free text annotation describing the effects of variation on protein structure and function, e.g. "reduces protein stability", "interferes with zinc binding". They have fig…