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It would be good if the RData file saved has the sampleIDs as colnames instead of the file path.
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I have run SIRFindeR on a subset of RNAseq available from GTEx. From the SIRFindeR vignette, I got the impression that info on the same introns would be available in "ResultsByIntron.txt". As you n…
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Shall we remove this? It's now running in a script.
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### Description of the bug
I'm running the pipeline and getting this error:
ERROR ~ Error executing process > 'NFCORE_SCNANOSEQ:SCNANOSEQ:UCSC_GTFTOGENEPRED'
Caused by:
Failed to pull singul…
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### Description of the bug
Hello!
I'm trying to process my small rnaseq data using only R1 reads and always get the same error. What could it be? [nextflow.log](https://github.com/user-attachments/…
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Hi,
I am running the example data with the following command.
`braker.pl --genome genome.fa --prot_seq proteins.fa --prg gth --bam RNAseq.bam --gth2traingenes --softmasking --cores 22 --UTR=on -…
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1. I was annotating a mammalian genome and the program crashed. There does not appear to be intermediate files (beyond logs). Before I profile is it likely I just went above 500Gb of RAM and should…
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Hi,
thank you for your super-interesting tool.
I have some questions about the snakemake_config.yaml (If I plan to run all pipeline together using snakemake)
1. This file has to stay in the IRI…
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### Description of the bug
Hi, thank you for developing this pipeline. It has exactly all the steps I am interested in. I am receiving the following error related to swap limit/ cgroup and the exec…
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**Describe the bug**
DCC quits when trying to combine individual circRNA read counts. This is only when I run it using a docker in an interactive queue:
bsub -Is -q research-hpc \
-a 'docker(budde…