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**Is your feature request related to a problem? Please describe.**
I've encountered a problem when using JBrowse 2's linear synteny view to observe synteny results generated by minimap2. The issue ar…
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Hi,
I am try to run step by step.
From illumina reads, first assemble:
komics assemble --threads 4 --kmin 99 --kmax 119 --kstep 10 AM minic/AM_R1.fastq.gz minic/AM_R2.fastq.gz
blastn -out /home/…
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Hello Vince Buffalo,
the findorf program is very useful for me , but when i tried to use it ,it always send errors.
My linux os is ubuntu biolinux 7, python version is 2.7, biopython is 1.6, Numpy …
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would it be possible to combine size, scaled, and track-abundance info to calculate complexity of a signature in some way? I think what I want to know is the approx number of k-mers as a ratio of the …
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The first features is to provide to Biopandas mechanisms to represent the sequence data. We can say sequence as String object representing biological sequences with alphabets.
Examples: Sequence (Ge…
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Hello. Upon running the first step code of your program, python run_pipeline.py feature_extract --input_fasta data/gencode_v17_5utr_15bpcds.fa --output_dir output/, the code command results in it gene…
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Thank you for developing such a promising software for the scientific community.
I tried running Alphalink2 with several datasets, including the rpoa-rpoc dataset used in the bioRxiv manuscript but …
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I am parsing my sequences with SeqIO and I have ambiguous DNA specified in my alphabet. I successfully translate the sequence and store in a list called "protein". When I build the alignment however:
…
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This came up in the code review yesterday (@tanaes). It would be great to relate the sequences into a coherent entity in order to represent contigs in one genome or pan-genomes. We argue that it shoul…
RNAer updated
6 years ago
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### Setup
I am reporting a problem with Biopython version, Python version, and operating
system as follows:
```python
import sys; print(sys.version)
import platform; print(platform.python_imp…