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**Is your feature request related to a problem? Please describe.**
In HPS, for GNNs it would be great to have a python lookup in function which could take in indices on the GPU and return the gathere…
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Following the pipeline shown in [input pipeline](https://github.com/tensorflow/gnn/blob/main/tensorflow_gnn/docs/guide/input_pipeline.md) and [modeling](https://github.com/tensorflow/gnn/blob/main/ten…
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I am carrying out my own analysis and am having some issues. The simulated graphs are generated just fine (i.e. I needed 5 graphs for chr1 and they all worked, generated .gfa and .dgl files), but fol…
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I doubt that the code is still based on score-matching methods. In `models/epsnet/dualenc.py`, line 478, the noisy sample in forward diffusion process is different from the eq.(4) in DDPM, and the equ…
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> neighborhood: [48 40 43]
neighborhood: [48 40 43]
neighborhood: [48 40 43]
start training...
1%|▏ | 68/5112 [00:10
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Hi Kiarash,
I got the following error when trying to run the program with a simple map and sequence file("model_angelo build -v PostProcess/job099/postprocess_masked.mrc -f hS.fasta -o model_angelo/"…
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Are there any plans to make it simpler for users to utilize any type of ml model (cnn, rnn, gnn, etc.) they want with Vespa during inference?
`pyvespa` is a useful tool to integrate ml models with …
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My calculation failed in the below lines of model_angelo.gnn.inference.infer(), because I used a FASTA file with '.fa' extension.
https://github.com/3dem/model-angelo/blob/8b57c9ddd675480ca24d01799…
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This is graph neural networks modeling and statistics, to be implemented as a new computational-visitor-patterned workflow in SPT. It will start from any dataset available in an ADI-structured databas…
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## 🐛 Bug
If we run distributed inference inside the training loop with num_sampler > 0, we will get the following error.
```
Client[6] in group[0] is exiting...
0it [00:01, ?it/s]
Traceback (mo…