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Hello, I would like to know if you have published the code to project the pre-trained weights of the BERT model into Monarch matrices. I cannot locate the code for this (I have also looked in the fly …
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The current loader is association-centric; i.e. each document is a relationship between two objects. This is useful for the majority of queries.
It would also be useful to have an object-centric load…
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* AmiGO evidence solr schema: https://github.com/geneontology/amigo/blob/6165f094fd3770c731b517ca754edfb537e9295e/metadata/ann-config.yaml#L299-L342
* Monarch example evidence model: https://github…
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See https://github.com/monarch-initiative/monarch-app/issues/1022#issuecomment-149031875 as a reference. We now support data downloads for any ID, but we could use some sort of versioning or timestam…
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Making a ticket here for tracking purposes, here is the time line of events:
RGD implemented - https://github.com/monarch-initiative/dipper/pull/516
RGD broken - Jan 2018
@putmantime proposed…
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Hi there!
Monarch looks awesome. I haven't seen anything about creating images of stories, then testing they don't change later.
I'm using https://pub.dev/packages/golden_toolkit which is great t…
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This is odd, but maybe fine? Does this look like something odd in phenio @matentzn or is it expected? (I'm assuming the d2p and g2p associations are expected)
http://next.monarchinitiative.org/nod…
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Dangling edges found for Panther. See https://monarch-initiative.github.io/monarch-qc/ for the report; https://data.monarchinitiative.org/monarch-kg-dev/ for the data.
Find out why and suggest a r…
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For this query
http://localhost:8888/api/bioentity/gene/HGNC:11593/homologs/?homology_type=O&fetch_objects=false
The JSON returned is this and clearly the taxon for zfin is missing :
{'id': '11d…
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"This resource consists of mouse sperm lines for ENU-induced single-SNV mutations across more than 10,000 genes. In total there are over 250,000 SNVs that have been computationally predicted for effec…