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Hi guys,
Thanks for the good work,
Using a cluster computer, I was downloading your databases the full version and it stopped at step 14
2021-10-30 20:29:18,929 [INFO]: Step 14
2021-10-30 20:…
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Hello,
I keep on getting a "GFF file is not in GFF3 file format!" error while running `samtools mpileup` + `ivar variants`. This is the command line:
```bash
samtools mpileup \
-aa -A -B \
--…
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this is not a "soon" issue, but there appears to be substantial opportunity for using amino acid k-mers to find contamination...
e.g. https://github.com/bluegenes/2020-gtdb-smash/issues/1
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I use prokka a lot but having an issue with my HMM file.
I am using a custom database and used hmpress prior running to index the HMM file.
However, I am getting this error:
````Your HMM is not…
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Hello,
I saw that pyrodigal can use different translation tables (issue #34), which is great!
Do you know if pyrodigal can correctly identify selenocysteine insertions? (And pyrrolysine too)
I …
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Hi again.
Today, I installed metaGT on our machine using `git clone`.
After installing it, I tried to test the minimal dataset described in README - 'Quick Start' - 4, but it did not work.
``…
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Hi, geNomad is a great tool and is very useful for my research. I was wondering if it would be possible to modify it to take GBK or GFF3 format files as input rather than just fasta nucleotide? Such a…
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(Some months back I did this successfully to submit a new strain from a different genus, so while I might be doing something wrong/different, I suspect the ENA validator has become stricter in the mea…
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Hi Torsten!
after seeing the usual 6-months "automated" failure of `tbl2asn`, which is probably something you can't change unfortunately due to upstream decisions by NCBI, I'm opening this issue to…
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