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Good afternoon,
I don't know if it's already possible to do in your algorithm, but I was thinking if we can cluster by protein feature. For example, output clusters that are associated with the act…
ghost updated
7 years ago
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Hello, Researcher
Thanks for your research, I am interested in your research, but I can only find the released data mostly related to the BP term, I want to ask whether you plan to release other da…
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I've been using an old version of gffread bundled with cufflinks 2.2.1 to create the transcript sequences given a GTF and genome FASTA. Recently I stumbled on trans-splicing from transcripts originati…
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### Data Owner Name
NHGRI
### Data Owner Country/Region
United States
### Data Owner Industry
Life Science / Healthcare
### Website
https://www.encodeproject.org/
### Social Media Handle
Alys…
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**Are you using the latest release?**
If you are not using the latest release of funannotate, please upgrade, if bug persists then report here.
v1.8.13
**Describe the bug**
A clear and concise des…
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Hi, thank you for this approach, absolutely fascinating! I'm hoping to use this in a workflow to assess and triage eukaryotic genome annotations using FoldSeek. The range of protein sequences can be s…
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GO:0004647 phosphoserine phosphatase activity
I have one annotation to this, and the rest to the sibling
GO:0004722 protein serine/threonine phosphatase activity
(so it is the same as the serine …
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The OFFICIAL ticket for this. Related to https://github.com/pantherdb/features-bugs/issues/20 as that ticket is about formatting the input for this ticket's new code.
Currently being developed in h…
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Which proteins have predicted disordered regions in MobiDB, but are not yet annotated manually in DisProt. The same for PED.
Basically an intersection and union between the resources in order to pin…
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Hi Sam,
In my statistical analysis, some of the functions from the RefSeq_bac database are being categorized as different proteins only because of a small difference in their names like a dash (e.g…