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Hi, we used the braker3 to predict genes based on the RNA sequencing data and homologous protein. The command is braker.pl --genome=ave.chr.fa --threads 50 -softmasking --rnaseq_sets_ids=rna --rnaseq…
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consider merging
increased subtelomere-derived RNA level
increased subtelomeric heterochromatin RNA level
_Originally posted by @ValWood in https://github.com/pombase/fypo/issues/44…
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### Enzyme, ADAR (proof-read and correct mistakes in RNA)
[**ADAR editing enzymes** are found in all multicellular animals and are conserved in sequence and protein organization. The number of ADAR g…
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Hi LRLoop Team,
I followed the tutorial of [LRLoop analysis starting from Seurat objects] to learn cell-cell interaction.
I use your pre-calculated default networks and two celltypes each have two …
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Hi, thank you for providing with us a great package.
I have been analyzing snRNA-seq data using Seurat, and now need to convert the data to Anndata format for the downstream analysis.
I tried to rep…
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I have RNA-seq data from two conditions (control and splicing factor knockout) and would like to use the SpliSER tool to analyze differential splice site usage between these conditions. To do so, I ne…
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- [x] http://www.rna-society.org/rnalocate/
- [Download](http://www.rna-society.org/rnalocate/download.html)
- Article: RNALocate: a resource for RNA subcellular localizations ([10.1093/nar/gkw7…
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## Quick brainstorm of RNA-Seq research plans.
| Samples |
| --- |
| 001_002_RNA_Blood_Scripps-10-1_02-02-15 |
| 001_002_RNA_Blood_Scripps-1_09-25-14 |
| 001_002_RNA_Blood_Scripps-5_10-29-14 |
| 001_…
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### Please make sure these conditions are met
- [X] I have checked that this issue has not already been reported.
- [X] I have confirmed this bug exists on the latest version of anndata.
- [X] (optio…
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https://mattermost.incubateur.net/betagouv/pl/1yd8hp9ydjfkbkb43ycdxffj7y
rna : W922012428, année 2020, prod et préprod
Piste: modifier le mapping clôturé vers accordé