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Hi,
Thanks for update MAESTRO, I have installed the latest MAESTRO but it reports an error:
Seems it is Seurat problem? My Seurat version is 3.99
> Registered S3 method overwritten by 'GGally…
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https://mp.weixin.qq.com/s/FMMXEJQQZSK5UHVE3uoxVw
ixxmu updated
2 years ago
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Currently, mcpcounter and xcell docker containers work well in the workflow. Need to bring cibersortx in.
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November 9, 11:51 AM
Using BRCA and HNSC, CIBERSORT proportion, three types of aggregate (lm06, lm11, lm22, detailed can be found in
`/home/yujia/Project/2020-11-06-TCGA_pancancer_immune/dat/cibe…
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Get access to the CIBERSORTx docker image (https://cibersortx.stanford.edu/download.php) and run on the CCRCC mRNA expression matrix to get patient-specific cell predictions. Ideally we'd build a CWL…
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Hi.
We are trying to reproduce your deconvolution method for RNA-seq using the matrix of mixes you provide on your github (TPMPBMC.txt). Your method returns a matrix of 'beta' coefficients that, theo…
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Hello great team,
I am your old user of CIBERSORT. As far as I'm concerned, this great tool experience is awesome. This time I want to try your new tool about CIBERSORTx to get the expression and m…
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https://mp.weixin.qq.com/s/TA3S1hQSSMAAhkVrorJ6Tg
ixxmu updated
3 years ago
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/RaikOtto/artdeco
Confirm the following by editing…
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There is a docker container for MCP-Counter here: https://quay.io/repository/biocontainers/r-mcpcounter?tab=tags
We should be able to pull it in a CWL tool and run it on a gene expression matrix simi…