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Samples that contain reads that are identified as "Bradyrhizobium mercantei" appear to be breaking the pipeline during the estimate abundance phase. When I look into the `consensus_classification.csv`…
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Hello,
GO:0043886 (structural constituent of carboxysome, an MF term) has the following definition:
"The action of a molecule that contributes to the structural integrity of a carboxysome, an organe…
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Hello,
There is a term for the assembly of chloroplast RuBisCO (GO:0110102), but I can't use it as I am annotating cyanobacterial RuBisCO. Therefore I would either like to have non-organism specifi…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/fomotis/cyanoFilter
Confirm the following by edit…
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## Environment
- [ ] Installed via pip (include the output of `pip list`)
- [x] Using a conda environment (include the output of `conda list && conda list --revisions`)
- [ ] Using a Docker contain…
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Hello,
I was wondering how chloroplast RPs are assigned with singleM. I don't think there is a category for chlorplasts in the database singleM uses. Are they assigned to Eukarya or maybe to Cyanob…
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Hello Kevin,
I have spent a month home on vacation and added around 1500 words to en_GB.
Here is the list of the ones who appeared as typos in US.
Please notice that some may be GB specific.
I am …
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I ran the following code and got the following output. Structure.DNA Extracted.from contains 4 different values: Leaf, Rhizome, Root, and Sediment. However, the summary does not show the coefficient a…
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Currently, glutathione is present as a metabolite needed in the biomass reaction. I cannot find any experimental indication as to why this was initially added.
A problem we currently have is that we …